FastQCFastQC Report
Sun 21 May 2023
EGAF00007924860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528044
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26480.5014733620683125No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14730.27895402655839285No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12970.2456234707713751No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10220.1935444773541599No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10050.19032504867018657No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10030.189946292354425No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8520.16135019051442684No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8410.1592670307777382No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8390.15888827446197665No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6390.12101264288582013No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6380.12082326472793933No Hit
ATTGAAAACGTAGCATTCTTCGGCAAACTGC5890.111543734991781No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5540.1049154994659536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)