FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505071
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13360.2645172658893502No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10900.21581124237978422No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10860.2150192745178401No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9770.19343815027986166No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9230.18274658414361547No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9070.1795787126958388No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8950.17720280911000633No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8710.17245100193834134No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6620.13107068115175885No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6020.11919116322259642No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5730.11344939622350125No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5410.10711365332794795No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5400.10691566136246192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)