FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478304
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12570.26280357262326887No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10040.2099083428112665No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT8270.1729025891483241No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8020.1676757877835017No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7230.151159095470663No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7090.14823208670636248No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6950.14530507794206196No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6670.1394510604134609No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6470.135269619321603No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5820.12167993577306482No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5330.11143540509801297No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5180.10829932427911955No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5000.10453602729644745No Hit
GTCTACACCTTCCGCAACGGCCAGCGCTTTAACGTTGCCATCGA4810.10056365825918245No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT4800.10035458620458956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)