FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478304
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17510.366085167592159No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14110.2950006690305747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12560.262594500568676No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12400.2592493476951897No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9110.19046464173412725No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8390.1754114538034388No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8390.1754114538034388No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7840.1639124908008296No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7540.15764032916304277No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7090.14823208670636248No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5830.12188900782765773No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5790.12105271960928614No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5570.11645313440824245No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5130.10725396400615508No Hit
GTCCTGGTTGGCGACCTGGACGACGAACAGA5020.10495417140563325No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC4800.10035458620458956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)