FastQCFastQC Report
Wed 31 May 2023
EGAF00007924865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570003
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9210.16157809695738445No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9010.15806934349468335No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8280.14526239335582444No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7930.13912207479609756No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7570.13280631856323563No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7060.1238589972333479No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5880.10315735180341157No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5780.10140297507206103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)