FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570003
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18860.33087545153271125No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15130.2654371994533362No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10230.1794727396171599No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9140.16035003324543906No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8570.15035008587674098No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6870.12052568144378187No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6160.10806960665119307No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5720.1003503490332507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)