FastQCFastQC Report
Sun 21 May 2023
EGAF00007924868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484128
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCCAACATGGACATCGATGGTATTAACA19400.40072047061934035No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13840.2858748099676119No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12500.25819617952277085No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8670.17908487011699387No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7980.1648324410073369No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7920.1635930993456276No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7420.1532652521647168No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6890.1423177341529513No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG6200.12806530504329433No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4850.10018011765483509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)