FastQCFastQC Report
Sun 21 May 2023
EGAF00007924870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488248
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCCAACATGGACATCGATGGTATTAACA18500.3789058019694909No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14630.2996428044764136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12100.2478248758827481No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10160.20809097016270423No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8180.16753780865461815No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7960.16303190182038635No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7420.15197194868181743No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7210.14767085579459618No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG6240.12780390293457422No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5020.10281660139928889No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)