FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510708
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28810.5641188311128864No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17440.34148672039599925No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17040.3336544561667332No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14370.28137409243638245No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12990.25435278084541457No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12880.2521989081823664No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10770.21088371437298808No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9770.191303053799823No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9460.1852330490221418No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9370.18347078957055696No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8070.15801593082544232No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7260.1421555957611786No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6710.1313862324459378No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6140.12022525591923369No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5790.11337202471862591No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5660.11082653884411445No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5590.10945589260399288No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC5580.10926008599826124No Hit
TCCGCGATTGTCCAGGGTGACCGCCAAGAAG5450.10671460012374977No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5380.10534395388362822No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5300.10377750103777503No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5160.10103620855753191No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)