FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486049
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12890.26519959921736286No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12170.2503862779267111No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12050.24791739104493582No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11970.2462714664570856No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10760.2213768570658514No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8810.18125744523700285No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8800.18105170466352158No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8290.17055893541597658No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7960.16376949649109454No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6920.14237247684904197No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6600.13578877849764118No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6440.1324969293219408No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5820.11974101376610177No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5580.11480324000255118No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5500.11315731541470099No Hit
ACGCTGCTGGATAGCGTCTTTGATGATCTGCGGCAGAATTTTAC5480.11274583426773843No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5420.1115113908268508No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5410.11130565025336951No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5090.10472195190196873No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4960.10204732444671218No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4960.10204732444671218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)