FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486049
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44460.9147225896977464No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25950.5338967881839074No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18160.3736248814419945No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16230.3339169507601086No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13010.2676684860991381No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12550.2582044197189995No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11730.241333692693535No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10600.218085007890151No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9000.18516651613314708No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8460.17405652516515824No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7670.15780301986013756No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7390.15204228380266188No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6350.13064526416060931No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5670.11665490516388265No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.11439175885558862No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5380.1106884285329257No Hit
TCCGCGATTGTCCAGGGTGACCGCCAAGAAG5330.10965972566551932No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC5090.10472195190196873No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5080.10451621132848746No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5080.10451621132848746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)