FastQCFastQC Report
Sun 21 May 2023
EGAF00007924883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513632
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13900.2706217681141362No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13670.266143853965485No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12290.23927636907357797No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12060.2347984549249268No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10540.20520528315992773No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9560.18612547504828358No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9230.1797006417045667No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9010.17541741947542208No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8580.16704566693663947No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7620.14835524266400849No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7400.14407202043486386No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6990.13608965173509438No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6380.12421344464519345No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6150.11973553049654227No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6000.11681515170394367No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5940.11564700018690424No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG5600.10902747492368076No Hit
ACGCTGCTGGATAGCGTCTTTGATGATCTGCGGCAGAATTTTAC5570.10844339916516105No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5570.10844339916516105No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5350.10416017693601644No Hit

[OK]Adapter Content

Adapter graph