FastQCFastQC Report
Sun 21 May 2023
EGAF00007924884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513632
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28510.555066662513239No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18360.3574543642140676No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16700.3251355055759766No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14120.2749049903432808No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13860.2698430004361099No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12220.23791352563703197No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10620.2067628185159803No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10150.1976122982991714No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10050.19566537910410564No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9960.19391315182854651No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8380.163151828546508No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8370.16295713662700143No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7350.14309856083733102No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC6080.11837268705999625No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6080.11837268705999625No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5930.11545230826739768No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5790.11272662139430564No Hit
TCCGCGATTGTCCAGGGTGACCGCCAAGAAG5450.10610709613108218No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5350.10416017693601644No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5330.1037707930970033No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5290.102992025418977No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5260.1024079496604573No Hit
CGTCAGAAACCGAACAACAACAACAACAAGA5180.1008504143044047No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5140.10007164662637841No Hit

[OK]Adapter Content

Adapter graph