FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506067
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC25000.49400573441856516No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22680.4481620022645223No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18670.3689234824637845No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17680.3493608553808093No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16340.32288214801597415No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13540.2675535057610949No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11350.22427860342602857No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10810.21360807956258757No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10540.20827281763086705No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC10100.19957831670510034No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9520.1881173836665896No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8950.1768540529218463No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8450.166973938233475No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7290.1440520721564536No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7070.1397048216935702No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7060.1395072193998028No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6660.13160312764910576No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6420.12686067259868752No Hit
GTTAGCGGACAGTTCCGCCGCTTTACGTTCCGCTTCCTGACGGT5980.11816617167292078No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5790.11441172809133968No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5630.11125009139106086No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5500.10868126157208434No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5480.10828605698454948No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5180.10235798817152669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)