FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506067
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA52471.0368192353976844No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27210.5376758413411663No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25090.495784155062472No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17610.34797763932443726No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17200.33987594527997284No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14860.2936370085383951No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11640.23000906994528392No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG10600.20945843139347164No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10320.2039255671679837No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9890.19542866853598434No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9310.18396773549747364No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9260.18297972402863652No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8800.17389001851533492No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7830.1547225960198946No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7500.14820172032556955No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7340.14504008362529072No Hit
GAACTGGCTCGCCGTCAACAGGAAGAACGTA7280.14385446986268616No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7000.13832160563719825No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6840.13515996893691942No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6830.13496236664315198No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6380.12607026342361782No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5930.11717816020408364No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5570.11006447762845631No Hit

[OK]Adapter Content

Adapter graph