FastQCFastQC Report
Wed 31 May 2023
EGAF00007924887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510350
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24300.4761438228666601No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22140.4338199275007348No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18950.3713138042519839No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16610.32546291760556484No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16440.3221318702850985No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13640.2672675614774174No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11640.228078769471931No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11100.2174977956304497No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10590.20750465366905063No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC9670.1894778093465269No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9620.18849808954638975No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8790.17223474086411286No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8360.16380915058293327No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7670.15028901734104044No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6590.12912706965807777No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6560.1285392377779955No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6540.12814734985794063No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6040.11835015185656901No Hit
GTTAGCGGACAGTTCCGCCGCTTTACGTTCCGCTTCCTGACGGT6020.11795826393651415No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5600.10972861761536201No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5590.10953267365533456No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5570.1091407857352797No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5500.10776917801508769No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5360.10502596257470365No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5200.10189085921426472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)