FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493527
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23790.482040496264642No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21640.4384765169889388No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19520.39552040719150117No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16550.3353413288432041No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15910.32237344664020406No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12750.2583445282628914No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11440.2318008943786257No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11010.22308809852348505No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10030.20323102890014125No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC9410.19066839301598495No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9300.1884395382623443No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8500.17222968550859427No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8300.16817722232015675No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7410.15014376113160982No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7050.1428493273924223No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6180.12522111252271914No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6160.12481586620387537No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6080.12319488092850037No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5720.11590044718931285No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5670.11488733139220347No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5610.11367159243567222No Hit
GTTAGCGGACAGTTCCGCCGCTTTACGTTCCGCTTCCTGACGGT5540.11225323031971908No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5420.10982175240665658No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5040.1021220723486253No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5010.10151420287035967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)