FastQCFastQC Report
Wed 31 May 2023
EGAF00007924890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493527
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48850.9898141337758622No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44550.9026861752244557No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25760.5219572586707516No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25720.5211467660330641No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16650.3373675604374229No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15860.32136033084309473No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15250.30900031811836026No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11390.23078777858151633No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG9870.19998905834939124No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9360.18965527721887557No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9200.18641330666812556No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9000.18236084347968803No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8780.17790313397240679No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7640.15480409379831298No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6900.13980998000109418No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6730.1363653862909223No Hit
GAACTGGCTCGCCGTCAACAGGAAGAACGTA6600.1337312852184379No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6540.13251554626190665No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6330.12826045991404725No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6150.1246132430444535No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6060.12278963460965661No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6000.12157389565312536No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5130.10394568078342219No Hit
GTGCGTGCATCTAACCTGTCCGCCGAACAGC5110.10354043446457843No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5070.10272994182689092No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG4980.10090633339209405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)