FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472506
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44390.9394589698331873No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16590.35110665261393503No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12440.26327708007940637No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10190.21565863713899927No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9300.19682289748701606No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8620.1824315458428041No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8090.171214757061286No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7110.15047427969168647No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6810.14412515396629885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6780.14349024139376007No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5690.12042175125818508No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5330.11280280038771995No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5300.11216788781518118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)