FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492356
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18080.3672139671294754No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12760.25916206972190853No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10550.21427584918229897No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10500.2132603238307241No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9840.19985538918993576No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8590.17446725540056382No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8360.16979583878331939No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8090.16431200188481507No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7870.1598436903378856No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6730.1366897123219784No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5670.11516057486859102No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5330.10825500247788186No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5270.10703637205599201No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)