FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541089
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50270.9290523370462161No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17820.3293358393905624No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15900.2938518432272694No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14530.26853253346491984No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11930.22048128866046066No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10580.19553160385814536No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7280.13454348545248565No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6910.12770542369185106No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6810.12585729889167957No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6130.11329005025051332No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5950.1099634256102046No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5890.1088545507301017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)