FastQCFastQC Report
Wed 31 May 2023
EGAF00007924909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513877
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT29540.5748457315661141No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23890.4648972419470028No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17140.33354285169408243No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16360.31836412215374493No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15970.31077475738357624No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15560.3027961944200655No Hit
GAAGTGACCAATACGGGCCGGACGACGCTGCGGTACGGTAGCTG14250.2773037127561654No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13440.26154118592581493No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11790.22943233497510102No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG10960.2132806099514086No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10720.20861023163130477No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10200.19849107860441312No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10130.19712888492771616No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9500.1848691418374436No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8890.172998596940513No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8860.17241479965050002No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8360.16268484481695036No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8060.15684687191682056No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6980.1358301694763533No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6770.13174358844626244No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6500.12648941283614562No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6280.12220823270938377No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6080.1183162507759639No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6050.1177324534859509No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5650.10994848961911119No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5420.10547271039567833No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5370.10449971491232338No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5200.10119153026891649No Hit
ACGGGCTGCGGATGCAGCCACGGATGCAGAGGTGGTACGAACGC5180.10080233207557451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)