FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513877
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31910.6209657174771395No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30810.5995598168433303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18650.36292731529140243No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18220.3545595541345497No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17750.34541339659101306No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16550.32206150499049385No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15340.2985150142933037No Hit
ATGGAAAAAACCCCGGCAGAAACTACCGCCG14040.27321713172607454No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12740.24791924915884542No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11870.230989127748469No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11730.2282647403950751No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11520.22417815936498423No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11380.2214537720115903No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11210.21814558736818346No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10300.20043706957112306No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10040.19537749305767724No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9470.18428534454743062No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8710.16949581320043514No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8350.16249024572027937No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7670.14925750714665184No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7440.14478172792321897No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7420.144392529729877No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7360.14322493514985105No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7240.14088974598979911No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7060.13738696224972125No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6880.13388417850964335No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6670.1297975974795525No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5820.11325667426251808No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5730.11150528239247913No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5640.10975389052244018No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5620.1093646923290982No Hit
ACTCGTCCGAGCCGCCCGGCTACCGTACCGC5600.10897549413575623No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5270.10255372394561343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)