FastQCFastQC Report
Wed 31 May 2023
EGAF00007924912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492561
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43790.8890269428558087No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30110.6112948446994383No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28640.5814508253800037No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17100.34716512269546307No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16400.33295368492430377No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16270.33031441790965993No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15170.307982158554981No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15150.30757611747580504No Hit
ATGGAAAAAACCCCGGCAGAAACTACCGCCG13380.2716414819687308No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11690.23733101077836044No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10970.22271353192802515No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10970.22271353192802515No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10720.21763801843832542No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10460.21235948440903765No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9360.19002722505435876No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9090.184545670485483No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8920.18109432131248718No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7940.16119830843286415No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7800.1583560208786323No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7420.15064124037428867No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7370.14962613767634872No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7120.14455062418664896No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7090.14394156256788498No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6740.13683584368230534No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6630.13460261774683746No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6580.13358751504889751No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6420.13033918641548967No Hit
ACTCGTCCGAGCCGCCCGGCTACCGTACCGC5660.11490962540680241No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5450.1106461940754546No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5330.10820994760039873No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5140.10435255734822693No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5100.10354047518987496No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5070.10293141357111098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)