FastQCFastQC Report
Sun 21 May 2023
EGAF00007924914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524427
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48600.9267257406655264No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22360.4263701144296537No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17040.324926062159271No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14090.2686741910694911No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13600.25933065993932425No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13150.2507498660442731No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12260.23377896256294964No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11860.22615159021179307No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11800.22500748435911955No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10210.1946886792632721No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10100.19259115186670406No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9830.18744267552967334No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9530.1817221462663059No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9510.18134077764874806No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9030.17218793082736014No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8430.16074687230062523No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7540.14377596881930182No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6630.1264236967204206No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6540.12470753794141035No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6340.12089385176583203No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6250.1191776929868218No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6090.11612674404635917No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6080.11593605973758025No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6080.11593605973758025No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6050.11536400681124351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)