FastQCFastQC Report
Wed 31 May 2023
EGAF00007924917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475570
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15260.32087810416973317No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12070.2538007023151166No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10210.214689740732174No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9370.19702672582374833No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8800.1850411085644595No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7510.15791576424080575No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7170.15076644868263347No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6950.14614042096852198No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6280.13205206383918247No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5990.1259541182160355No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5560.11691233677481759No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5540.11649178880080745No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG5530.11628151481380238No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5410.11375822696974157No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5330.11207603507370104No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG5230.10997329520365036No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5050.10618836343755914No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4760.10009041781441218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)