FastQCFastQC Report
Sun 21 May 2023
EGAF00007924919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458528
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14440.314920790006281No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10880.23728103845348592No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9470.206530462698025No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9180.20020587619512878No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8960.19540791402051783No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7870.17163619233721825No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7240.15789657338265056No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6870.149827273361714No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6290.13717810035592154No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5860.12780026519645474No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG5830.12714599762718962No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5330.11624153813943751No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5240.11427873543164212No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5040.10991695163654128No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG5010.10926268406727616No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4890.10664561379021564No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4680.10206574080535975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)