FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478356
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15550.32507170391925677No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12300.25713067255349575No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10690.22347373086153408No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10520.21991989229778658No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10260.21448460978852568No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10110.2113488698793367No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10040.20988552458838186No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9870.20633168602463436No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9670.20215069947904907No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7960.1664032645142948No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7030.14696167707732316No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6400.1337915694587295No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6170.12898343493130637No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6140.1283562869494686No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5940.1241753004038833No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5520.11539522865815417No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5430.11351378471264079No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4920.10285226902139828No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4870.10180702238500197No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCAC4810.10055272642132637No Hit

[OK]Adapter Content

Adapter graph