FastQCFastQC Report
Sun 21 May 2023
EGAF00007924926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475641
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42720.8981563826499398No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25910.5447385738403544No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21650.4551752266940823No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21390.4497089191217746No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21340.4486577061271001No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17470.36729382033928953No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16950.3563612051946741No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16910.35552023479893446No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13540.2846684789578695No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13530.2844582363589346No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12510.2630134912675736No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11590.24367117216556183No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11250.23652292380177486No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11240.23631268120283994No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11090.2331590422188163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10980.2308463736305323No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10950.23021564583372753No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10250.21549866390828376No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9820.20645823215408257No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC9640.2026738653732542No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9380.1972075578009465No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9220.19384367621798793No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8700.18291106107337257No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8460.1778652386989347No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8200.17239893112662702No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8180.1719784459287572No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8090.170086262538343No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8060.16945553474153827No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7280.1530566120246152No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7260.15263612682674538No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7120.14969273044165662No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7110.14948248784272172No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6810.1431752098746744No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6640.1396010856927809No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5450.1145822164195265No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5390.11332076082591702No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5230.10995687924295844No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5210.10953639404508862No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5170.10869542364934899No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4970.10449057167065076No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4770.10028571969195255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)