FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480559
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42970.8941670013463487No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26440.5501925882149747No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22860.47569601235228137No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22280.46362673469854904No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20590.42845935670750107No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17900.3724828793134662No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17110.35604369078510656No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16950.3527142348806286No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13750.2861251167910704No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13180.27426393013136785No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12740.26510792639405356No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11470.2386803701522602No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11220.23347809530151345No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11200.23306191331345372No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11000.2289000934328563No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10960.22806772945673684No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC10590.22036836267763169No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10470.21787127074927326No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10370.21579036080897454No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10260.21350135987464597No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9820.20434535613733174No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9550.19872689929852524No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9020.18769807661494217No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8670.18041489182389675No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8610.17916634585971755No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8240.17146697908061237No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7800.1623109753432981No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7620.15856533745076046No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7620.15856533745076046No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7550.15710870049255138No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7350.152946880611954No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7220.1502416976895657No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6930.14420705886269947No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6710.13962905699404235No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5650.1175714116268762No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5580.11611477466866713No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5240.10903968087165156No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5100.10612640695523338No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5040.10487786099105417No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5020.10446167900299441No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4890.10175649608060613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)