FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924934

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924934
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501133
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15210.3035122412613019No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11620.23187457221935096No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9770.19495822466291385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9640.19236410294273176No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9110.18178806823737412No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8960.17879485086793329No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7210.14387398155779005No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7010.13988302506520225No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6400.12771060776280949No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5860.11693502523282243No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5740.11454045133726974No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5440.10855401659838806No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5390.1075562774752411No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5180.10336577315802392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)