FastQCFastQC Report
Sun 21 May 2023
EGAF00007924936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503799
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15680.3112352346868493No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11800.23422039345056261No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10880.21595914243577302No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9370.18598687174845524No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9040.17943664040619375No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8600.17070299861651173No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7060.14013525235262475No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6850.13596692331664018No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6200.12306495249097357No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5750.11413281884243517No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5670.1125448839715839No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5650.11214790025387109No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5530.10976599794759417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)