FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485886
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44870.9234676446738536No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15560.3202397270141556No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11550.2377100801422556No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9340.19222616004577206No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8190.16855805682814487No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7820.16094310187986482No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7250.14921195506764962No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6510.1339820451710895No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5780.11895794486772616No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5710.11751727771534887No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5400.11113718032624938No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5340.10990232276706882No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5280.10866746520788828No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4990.10269898700518228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)