FastQCFastQC Report
Sun 21 May 2023
EGAF00007924942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503655
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28900.5738054819271128No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26400.5241683295112727No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23330.4632139063446208No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13590.2698275605325074No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13150.2610914217073195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13070.25950303283001264No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12970.257517546733379No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12260.24342059544728037No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12060.23944962325401314No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10850.2154252414847465No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10370.20589490822090517No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10320.20490216517258836No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9820.19497473468942034No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8920.17710535981971787No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8850.17571551955207432No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8810.1749213251134209No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7980.15844179051136195No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7590.15069839473449087No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7400.146925971150887No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7350.1459332281025702No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6790.134814505961422No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6650.13203482542613496No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6290.12488707547825396No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6150.12210739494296691No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6080.12071755467532339No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6080.12071755467532339No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG6060.12032045745599668No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5280.10483366590225453No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5170.10264963119595756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)