FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485686
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44210.9102588915472135No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27160.5592090362909369No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27020.5563265154853136No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22320.4595561741536713No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12950.2666331745201632No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12660.2606622385656576No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12250.2522205704920463No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12210.25139699311901104No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11940.24583784585102308No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11070.22792503798750632No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11030.2271014606144711No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9890.20362950548296635No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9440.19436426003631976No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9330.1920994222604728No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8480.17459840308347369No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8230.16945104450200335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7330.15092055360871015No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6890.14186120250532236No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6760.13918457604295778No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6710.13815510432666372No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6560.13506668917778153No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6360.13094880231260528No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6290.12950754190979358No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6170.12703680979068782No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5890.12127176817944103No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5840.12024229646314696No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG5400.1111829453597592No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4990.10274127728614785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)