FastQCFastQC Report
Wed 31 May 2023
EGAF00007924946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506880
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29010.5723248106060606No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28800.5681818181818182No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23840.4703282828282828No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13150.2594302398989899No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12680.2501578282828283No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12670.2499605429292929No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12610.24877683080808083No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12590.2483822601010101No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12390.244436553030303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12060.23792613636363638No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10520.2075441919191919No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10310.20340119949494948No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10050.1982717803030303No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9710.1915640782828283No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9580.1889993686868687No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9060.1787405303030303No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8110.1599984217171717No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7550.14895044191919193No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7280.14362373737373738No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7260.14322916666666666No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6770.13356218434343434No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6750.13316761363636362No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6390.1260653409090909No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6210.12251420454545456No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG6020.11876578282828283No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5880.11600378787878789No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5790.1142282196969697No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5780.11403093434343434No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5240.10337752525252525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)