FastQCFastQC Report
Wed 31 May 2023
EGAF00007924947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463816
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC51021.1000051744657364No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT50171.0816789416492747No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC41800.9012194490918812No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC34880.7520223536919812No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG28440.6131741897649068No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC24490.5280111078531141No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24230.5224054366386671No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23210.500413957258913No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA20420.4402607930731152No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19590.42236576573468787No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18790.4051175466133121No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16360.35272608103213343No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT13250.28567362919778533No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12770.2753246977249599No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12080.2604481087327733No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG11620.2505303827379823No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10920.23543819100677854No Hit
GCGACGTTTCGTGCTCTGTTTGGTAGAGCTTTTGGTGGTTGCTG10060.21689635545129965No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT9740.20999706780274935No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8300.17895027338427308No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8010.17269779395277438No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8010.17269779395277438No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7920.1707573693016196No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7860.16946375286751644No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7370.1588992186556738No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7350.1584680131776394No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6830.14725667074874518No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6770.14596305431464202No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6730.14510064335857323No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6620.14272901322938408No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6590.14208220501233249No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6360.13712334201493698No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6290.1356141228418166No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6280.13539852010279937No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5910.1274212187591631No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5910.1274212187591631No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT5730.1235403694568536No Hit
CACCTGACCATTGGCGTGAGTGGTAACGTTGTAGGCGTTAGTTT5600.12073753384963003No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5320.11470065715714853No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5220.11254462976697656No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5050.10887938320368422No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4990.10758576676958105No Hit
CTGCCAACCCGCCGCTGCCTGACGTTCCAGGGCAGCCTGCAGTT4940.10650775307449506No Hit
TTTGGTCACACGCGGACCGTAAGTCGCGGTGCCGTCGGCGTGGG4800.1034893147282543No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4770.10284250651120272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)