FastQCFastQC Report
Sun 21 May 2023
EGAF00007924954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479086
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45950.9591179871672308No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9230.19265852059964184No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8430.1759600572757292No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7060.14736393883352886No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6520.13609247608988784No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4910.10248681865051368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)