FastQCFastQC Report
Sun 21 May 2023
EGAF00007924955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514841
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24640.4785943621428752No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24550.4768462496188144No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24180.46965956479767546No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20930.40653327920659005No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19990.38827521506639917No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18970.36846327312704313No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17140.3329183184711396No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16410.3187391835537574No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16180.3142717848811575No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15160.2944598429418015No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14680.28513657614681037No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT14160.2750363704522367No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13800.2680439203559934No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13320.2587206535610023No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12630.24531845754320264No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12220.2373548338224811No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11420.2218160558308293No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11150.21657171825864682No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10970.21307549321052519No Hit
CATCGCCTCAGCGTAAGCGCTGGAGAAGGTTGCGTAGGACGGAG10310.20025600136741248No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7620.1480068603704833No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7470.14509333949704858No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT7360.14295675752319648No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7340.14256828807340519No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7300.14179134917382258No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6990.13577007270205754No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6940.13479889907757928No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6920.134410429627788No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6560.12741797953154468No Hit
GCGGCTCGGACCCGGCGGAGAGTGGGAAGAGCTGCAAGAGGTGA6530.12683527535685774No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6360.12353328503363174No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6240.12120246833488396No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5710.11090802791541465No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5700.11071379319051902No Hit
TTCGCGGTCACGGCCGTTAGCGCCATTAACTTCGTAGTTAATCA5420.1052752208934409No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5340.1037213430942757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)