FastQCFastQC Report
Sun 21 May 2023
EGAF00007924956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514841
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA54621.060910067380026No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34790.6757426079119573No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33780.656124900697497No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25620.49762936518264866No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24950.4846156386146402No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21320.4141084334775202No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19910.38672133726723396No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18580.3608881188561128No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18370.35680918963330427No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16820.3267028072744789No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC14850.2884385664700364No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13910.27018050232984553No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13800.2680439203559934No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12990.25231090763944597No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12610.24492998809341138No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11510.22356416835489015No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9910.19248661237158657No Hit
GATAACGTGGCGACCTATGCTGCCGCCATCG9110.17694783437993478No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9090.1765593649301435No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8580.16665339396046547No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8310.16140905638828298No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7910.15363966739245707No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7540.14645298257131814No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7460.14489910477215295No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7380.14334522697298777No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7380.14334522697298777No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA7280.1414028797240313No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7020.13635277687674446No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6800.13207961292904025No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6700.13013726568008374No Hit
ATCCACTCCCAGCGTGAACGTGACATGTTCC6460.12547563228258823No Hit
GCGGCCGCCGGCGTGACCGTAATCTCCGTTG6080.11809471273655361No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5970.1159581307627015No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5530.10741180286729302No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5490.10663486396771042No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5350.10391557781917135No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5330.10352710836938005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)