FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520502
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA55531.0668546902797682No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36480.7008618602810364No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34850.669545938344137No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26900.5168087730690756No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25180.4837637511479303No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21400.41114155180959916No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20740.39846148525846203No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19530.3752146965813772No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19200.3688746633058086No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17040.32737626368390516No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14530.2791535863454896No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14300.27473477527463874No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13810.26532078647152174No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13180.25321708658179987No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12780.24553219776292887No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11210.21536900914886012No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10990.21114232029848107No Hit
GATAACGTGGCGACCTATGCTGCCGCCATCG9070.17425485396790022No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8830.1696439206765776No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8800.1690675540151623No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8030.15427414303883558No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7930.15235292083411783No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7820.1502395764089283No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA7520.14447590979477504No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7350.14120983204675486No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7280.13986497650345242No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7210.13852012096015No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7140.13717526541684757No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7090.1362146543144887No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6730.1292982543775048No Hit
ATCCACTCCCAGCGTGAACGTGACATGTTCC6460.12411095442476687No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5680.1091254212279684No Hit
GCGGCCGCCGGCGTGACCGTAATCTCCGTTG5610.10778056568466596No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5530.10624358792089175No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5480.10528297681853288No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5450.10470661015711755No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5340.10259326573192802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)