FastQCFastQC Report
Wed 31 May 2023
EGAF00007924969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465636
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27250.5852210739719438No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24380.5235849461811372No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22010.472686819747614No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19310.41470161241828385No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14720.31612675995842243No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14650.3146234397684028No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14480.31097251930692643No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12590.2703828741763953No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11350.24375263081033252No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10920.23451794964306885No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10920.23451794964306885No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10770.23129654923588383No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10250.22012902782430913No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9720.20874674638558874No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9670.20767294624986038No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9490.2038072657612384No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9420.2023039455712187No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9400.2018744255169274No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9130.19607590478399436No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9080.19500210464826603No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8380.1799689027480693No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7430.1595667001692309No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7380.15849290003350258No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6540.1404530577532665No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6250.13422501696604214No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6240.13401025693889648No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6230.13379549691175083No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6150.13207741669458548No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6140.1318626566674398No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6060.13014457645027447No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5950.12778221615167212No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5600.12026561520157375No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG5540.11897705503869976No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5360.11511137455007775No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5330.11446709446864074No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5260.11296377427862107No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4890.10501765327423138No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4870.10458813321994004No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4770.10244053294848336No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4680.10050769270417234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)