FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474552
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA50281.0595256157386335No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37920.7990694381226926No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28090.591926701394157No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26360.5554712655304371No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22920.48298184392858945No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19820.41765707446180816No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16100.3392673511016706No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14610.30786931674505635No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13810.2910113117213709No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12910.2720460560697247No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12110.2551880510460392No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11830.24928774928774927No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11270.23748714577116942No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10740.22631871744297782No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10670.22484364200340531No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9960.20988216254488445No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9590.2020853352214299No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9330.19660648358873212No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9200.1938670577723832No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9100.19175980714442253No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8430.17764122793708592No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7750.16331192366695324No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7690.16204757329017686No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7200.15172204521316948No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6720.14160724219895818No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6710.1413965171361621No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6430.13549621537787218No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6260.131913889310339No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6180.13022808880797046No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6140.12938518855678618No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6050.1274886629916216No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6030.12706721286602943No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6000.12643503767764122No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5460.11505588428665352No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5260.11084138303073215No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5220.10999848277954787No Hit
CCGGAAACTCTGGAACAGCTGACCCTGGTTG5120.10789123215158719No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5100.10746978202599504No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4940.10409818102125794No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4910.10346600583286973No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4890.1030445557072776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)