FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497372
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT32140.6461964083221412No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC31130.6258896761377802No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28570.5744191470368256No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19630.39467440869208564No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG18270.3673306901072035No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16920.3401880282766219No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC14570.29293969101598No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13450.27042133453431233No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13210.2655959724310979No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA11800.23724697007471268No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG11270.22659096209678067No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11150.22417828104517343No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA10180.20467577587801483No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9850.1980409029860949No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9700.19502505167158588No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8650.17391409247002243No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8510.17109929790981399No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7410.14898305493674754No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6980.14033761450182158No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6820.1371207064330119No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6810.1369196496787113No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6750.1357133091529077No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6380.12827420924378533No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC6260.12586152819217808No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6080.12224250661476722No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5870.11802031477445452No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5630.11319495267124004No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5440.10937487433952857No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5120.10294105820190924No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5080.10213683118470683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)