FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497372
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA69941.4061909395784242No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA30930.6218685410517681No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29040.5838688144889539No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25460.5118904964493377No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT18160.3651190658098968No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16950.3407911985395237No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14260.28670693163266125No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13950.2804741722493425No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12260.24649558077254047No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG11950.24026282138922178No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC11320.22759624586828367No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA10570.2125169892957384No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA10000.201056754300604No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9920.19944830026619914No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9590.1928134273742792No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9280.18658066799096049No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7670.15421053054856323No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7470.15018939546255117No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7380.14837988467384572No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7320.1471735441480421No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7320.1471735441480421No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7160.14395663607923243No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6630.13330062810130044No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA6200.12465518766637447No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6060.12184039310616601No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5990.12043299582606179No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5650.11359706617984125No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5620.11299389591693944No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5510.1107822716196328No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC5450.10957593109382915No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5120.10294105820190924No Hit
AAAAAATCTGGCGATGCAATTCTGTCTATCG4990.10032732039600138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)