FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473283
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT31330.6619718012267501No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC28320.5983734890118597No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT27330.577455771705301No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18160.38370277402737896No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG16770.3543334537686754No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14810.31292059930316535No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13430.2837625691182654No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13040.2755222562399241No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12780.27002871432102993No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG11160.23579972236484303No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11030.23305295140539592No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA10750.22713682933889448No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA9860.20833201277037205No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG8460.17875140243786486No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8350.176427211626025No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8180.17283528037136342No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8100.17114495978093444No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6740.14240950974364175No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6470.13670467775094394No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6230.131633715979657No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6050.12783049465119178No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6020.1271966244297809No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5840.1233934031013157No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5820.12297082295370845No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5790.12233695273229758No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC5690.12022405199426135No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5550.11726599096101063No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5180.10944825823027661No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5110.10796922771365125No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4940.10437729645898966No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG4830.1020531056471498No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT4760.10057407513052444No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)