FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507967
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA71411.4057999830697663No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA31150.6132288121078732No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29670.584093061163422No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA26050.5128285892587511No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT17700.3484478322410708No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17540.3452980213281571No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15090.29706654172416713No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13790.2714743280567439No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13650.2687182435079444No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG12040.23702327119675096No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC11350.2234397116348109No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA11230.22107735345012572No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10510.20690320434201434No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9720.1913510129595033No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9500.18702002295424702No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9320.1834764856772192No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8010.1576874088277388No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7480.14725366017871241No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7450.14666307063254108No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7300.14371012290168456No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7100.13977285926054253No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7070.13918226971437123No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6970.13721363789380017No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6200.12205517287540334No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6140.12087399378306071No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5870.11555868786751895No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5860.11536182468546184No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5560.10945592922374878No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC5510.10847161331346328No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5340.10512493921849253No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5270.10374689694409284No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5160.1015814019414647No Hit
AAAAAATCTGGCGATGCAATTCTGTCTATCG5130.1009908123952934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)