FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484732
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44230.9124629692283571No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39760.8202470643572117No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25940.5351410676415009No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18420.38000379591196787No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15900.32801630591749664No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14830.3059422526261934No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14140.2917075827467549No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13130.2708713268362724No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12580.2595248508454156No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11990.24735317660067835No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11890.24529018096597707No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8680.17906802109206738No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7420.1530742760948318No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6220.12831832847841693No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5470.11284586121815766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)