FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533023
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT83951.5749789408712194No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15280.28666680424672103No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15160.2844154942657259No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14160.26565457775743256No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12840.2408901679664855No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10780.20224267995940137No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8890.1667845477587271No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7980.14971211373618024No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7280.13657947218037497No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6710.1258857497706478No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6650.1247600947801502No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6180.11594246402125237No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5740.10768766075760333No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5670.1063743966020228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)