FastQCFastQC Report
Wed 31 May 2023
EGAF00007925006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518369
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT92401.7825140006443287No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43500.8391705522513886No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14640.2824242962059845No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13980.26969205334423935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12400.23921183558430387No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10700.20641666457677832No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8700.16783411045027768No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7470.1441058396624798No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6310.12172795826910945No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5970.11516892406760436No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5820.1122752325081168No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5510.10629493661850921No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5360.10340124505902165No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5330.10282250674712415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)